Thanks for the reminder Michael, I had an update but my cookie timed out before I finished so when I went to post I got booted to the login screen and lost my post and my mind...

well... and then other stuff happened... anyway...
What I chose to do turned out massive, but just to remove the 3DS electronics I wouldn't call it massive. I took it ALL apart and removed EVERYTHING that had a 3DS stamp on it(including the stickers on the door)... if you just replace the board/rewire the hotends I don't think it is that much, though it is replacing the guts of it all.
As I mentioned before all the stepper motors can wire straight to most reprap boards from what 3DS did, (their board looks A LOT like
http://www.reprap.org/wiki/Melzi -Melzi is only 1 extruder btw)
The chamber heater is working fine using a SSR(solid state relay~$5-10) wired up to the 'bed' heater on my Duet+x4(again, there are alternatives but I don't have any complaints). To control the temperature you can just replace the small electonic board in the upper left of the back panel with a thermistor, using two of those wires to the new board bed temp pins. Then to control it, you just use the 'bed' settings in Kisslicer. pretty simple.
There is a relay board controlling the chamber heater by 3DS- under the bottom cover, up front, under a metal shroud. this may work with reprap boards, I haven't tried it. I just replaced an unknown with a known. If anyone would like to know I'll test it with my setup, just let me know.
If you mainly print with PLA its not required to use the chamber heater... unless you live in alaska... or Canada... maybe. 'room' temperature usually works well with it, it seems to be a main reason it seems most DIY guys will ONLY print PLA. Strictly speaking, prints will turn out better the more accurately you control the variables though.
I'm also looking into different extruder/adapter/motor setups.
I have printed as fast as 75mm/s and as slow as 10. The finish & dims get rough(.2 maybe .3 on the high end) that fast but I've done it several times(~23min print to a ~8min print difference). The better prints I've had have been within a .1 overall tolerance(including the seam and form). I've only done a few prints using the same *.STL files as I had with Cubify, but I haven't made the time to do a FULL apples to apples comparison yet... and I've still been doing a bit of experimentation.
http://www.thingiverse.com/thing:342198 prints as fast as 8 min total with my current settings(2min warmup, 6min print) but... now that I'm saying it I should do at least one comparison test at this point.
not as good as what I did before, I think I'm forgetting something.
Any questions, let me know.
Thanks,